HomeKit - Home Assistant Integration Help

Hi Everyone, I am new to Home Assistant and I am looking for some help with integrating Home Assistant with Homekit. Before I had Home Assistant, I bought only Homekit compatible devices. So I have a good amount of them currently set up directly through Homekit. I recently set up Home Assistant onto a raspberry Pi 3 and configured it to work with Homekit. I now have some smart devices that are not compatible with Homekit and have been able to integrate them to Homekit through Home Assistant with their designated integrations. But I have noticed that some devices that were already set up with my HomeKit are now duplicated in the Homekit app. Is there a way around this other than just hiding the devices in Homekit? I would prefer not to have to delete them from Homekit then reconnecting them through Home Assistant and I would prefer to use the Homekit app. Is it possible to select specific devices to be integrated into HomeKit from Home Assistant? From what I can tell, currently it just allows me to specify a type of device that gets integrated. Thank you in advanced for your help!