Some integrations no longer working after moving to HAOS instead of container version

I used to have HA installed in docker container on RPi. I backed it up and then set-up HAOS on a mini-pc and then restored from the back-up. Some of my integrations are not working at all and I can't seem to delete or reconfigure.
I thought I had found a post with a solution, but they had used Balenaetcher which I didn't.
I installed HAOS using a Ubuntu book stick and rufus.

Some of my integrations work fine, others are just not "loading" and I can't seem to reconfigure them. I've tried deleting them and when I restart they reappear and are still unloading.

The main error logs says:

Logger: homeassistant.util.package
Source: util/package.py:187
First occurred: 20:33:46 (12 occurrences)
Last logged: 20:33:47

Unable to install package pdfminer.six:
Unable to install package icalevents>=0.1.26,!=0.1.28:
Unable to install package pypdf:
Unable to install package curl_cffi>=0.7.0:

Everything seems to go downhill from there. I found some instructions to install pdfminer. I downloaded the psycript integration, but when trying to add it I get the "config flow could not be loaded: 500 Internal Server Error Server got itself in trouble".

I've been getting this error a lot!

Not too sure what info needed so here is the system info.

System Info:
Version - core-2026.5.1
Installation type - Home Assistant OS
Development - false
Supervisor - true
Docker - true
Container architecture - amd64
User - root
Virtual environment - false
Python version - 3.14.2
Operating system family - Linux
Operating system version - 6.12.85-haos
CPU architecture - x86_64
Time zone - Australia/Sydney
Configuration directory| - config

Any ideas??

Give a list of integrations not working?

Other than those, all working ok and UI accessible?

I am guessing you need to install some HA Apps or just reinstall some integrations and reconfigure the app settings to new environment. You should NOT be installing software directly in HA OS or really even docker.

Thanks for replying. It seems mainly the evnex and waste_collection_schedule that are refusing to load properly. I asked the same question in a local HA fb group and someone suggested trying Claude. I spent hours with Claude trying to fix things and still not sorted.

Claude found many smoking guns (apparently) but from what I can remember he confirmed I have enough memory, I have the right version of things. He thought the issue might be that Python was 3.14 but then found evnex should be compatible. I gave up late at night. I think the next thing I was going to try was setting up a pyscript.

The UI seems to be fine. It looks like there might be a few corrupt files from when I had it in docker on the RPi. It seems some things are silently failing on install and then causing problems down the line. Apparently some of the error messages are blank too. I don't really know enough to tell if Claude is right or gaslighting me :laughing:

I wondered whether if I take a copy of what I have now and then reinstall HAOS and then just start from scratch rather than using a restore? Could that be worth trying?

This sounds like a failing SD card symptom...
I suggest with a good backup, try building with a new SD card then restoring it.

Thanks everyone. I thought I would give a bit of an update. I am not sure if there was a better way to fix this, but in the end, I rebuilt it from scratch and did not use the backup. This seemed to fix the issues. Unfortunately when trying to install the waste integration I had ended up with additional sensors and found that I hadn't backed up the fresh install so decided to start again (I am a little sleep deprived and this just seemed easier).

In this whole process I decided to take the plunge and install prox mox, so that is what I have done. And I took a fresh backup so I can at lease get back to that.

Thank you for all your help and suggestions.