sqlite3.DatabaseError: database disk image is malformed

JDIacobbo · January 26, 2026, 1:45pm

I just had this issue happen again after starting over with a fresh DB at the beginning of the month. I found this issue on github of other users experiencing the same.

github.com/home-assistant/core

Database corruption during purge

opened 01:59PM - 17 Apr 24 UTC

elektrinis

integration: recorder database: sqlite3 problem in database

### The problem I've run recorder.purge service to purge and repack everythin…g above 5 days. It was a relatively large DB, over 10GB. It's running on proxmox VM with 4 cores Ryzen 4600G and 16GB of RAM. When run, RAM peaked at 97% right away, and CPU was jumping around 10-35% for some time. After an hour I noticed that new DB takes up only 18MB and there's a backup of corrupt DB saved, still full 10GB. Possibly another issue: after everything, RAM usage remained at 96%. It was not released? ### What version of Home Assistant Core has the issue? core-2024.4.3 ### What type of installation are you running? Home Assistant OS ### Anything in the logs that might be useful for us? ```txt Trere are three error entires in HA-core logs. One says there's a copy saved, the other two are: 1. Logger: homeassistant.components.recorder.util Source: components/recorder/util.py:141 integration: Recorder (documentation, issues) First occurred: 15:59:05 (1 occurrences) Last logged: 15:59:05 Error executing query: (sqlite3.DatabaseError) database disk image is malformed [SQL: UPDATE states SET old_state_id=? 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?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)] [parameters: (None, 4603904, 4603905, 4603906, 4603907, 4603908, 4603909, 4603910, 4603911, 4603912, 4603913, 4603914, 4603915, 4603916, 4603917, 4603918, 4603919, 4603920, 4603921, 4603922, 4603923, 4603924, 4603925, 4603926, 4603927, 4603928, 4603929, 4603930, 4603931, 4603932, 4603933, 4603934, 4603935, 4603936, 4603937, 4603938, 4603939, 4603940, 4603941, 4603942, 4603943, 4603944, 4603945, 4603946, 4603947, 4603948, 4603949, 4603950, 4603951, 4603952 ... 3901 parameters truncated ... 4603854, 4603855, 4603856, 4603857, 4603858, 4603859, 4603860, 4603861, 4603862, 4603863, 4603864, 4603865, 4603866, 4603867, 4603868, 4603869, 4603870, 4603871, 4603872, 4603873, 4603874, 4603875, 4603876, 4603877, 4603878, 4603879, 4603880, 4603881, 4603882, 4603883, 4603884, 4603885, 4603886, 4603887, 4603888, 4603889, 4603890, 4603891, 4603892, 4603893, 4603894, 4603895, 4603896, 4603897, 4603898, 4603899, 4603900, 4603901, 4603902, 4603903)] (Background on this error at: https://sqlalche.me/e/20/4xp6) Traceback (most recent call last): File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1971, in _exec_single_context self.dialect.do_execute( File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/default.py", line 919, in do_execute cursor.execute(statement, parameters) sqlite3.DatabaseError: database disk image is malformed The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/src/homeassistant/homeassistant/components/recorder/util.py", line 141, in session_scope yield session File "/usr/src/homeassistant/homeassistant/components/recorder/purge.py", line 87, in purge_old_data has_more_to_purge |= _purge_states_and_attributes_ids( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/src/homeassistant/homeassistant/components/recorder/purge.py", line 200, in _purge_states_and_attributes_ids _purge_state_ids(instance, session, state_ids) File "/usr/src/homeassistant/homeassistant/components/recorder/purge.py", line 519, in _purge_state_ids disconnected_rows = session.execute(disconnect_states_rows(state_ids)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/orm/session.py", line 2306, in execute return self._execute_internal( ^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/orm/session.py", line 2191, in _execute_internal result: Result[Any] = compile_state_cls.orm_execute_statement( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/orm/bulk_persistence.py", line 1617, in orm_execute_statement return super().orm_execute_statement( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/orm/context.py", line 293, in orm_execute_statement result = conn.execute( ^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1422, in execute return meth( ^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/sql/lambdas.py", line 603, in _execute_on_connection return connection._execute_clauseelement( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1644, in _execute_clauseelement ret = self._execute_context( ^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1850, in _execute_context return self._exec_single_context( ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1990, in _exec_single_context self._handle_dbapi_exception( File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 2357, in _handle_dbapi_exception raise sqlalchemy_exception.with_traceback(exc_info[2]) from e File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1971, in _exec_single_context self.dialect.do_execute( File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/default.py", line 919, in do_execute cursor.execute(statement, parameters) sqlalchemy.exc.DatabaseError: (sqlite3.DatabaseError) database disk image is malformed [SQL: UPDATE states SET old_state_id=? 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on this error at: https://sqlalche.me/e/20/4xp6) 2. Logger: homeassistant.components.recorder.core Source: components/recorder/core.py:920 integration: Recorder (documentation, issues) First occurred: 15:59:05 (1 occurrences) Last logged: 15:59:05 Unrecoverable sqlite3 database corruption detected: (sqlite3.DatabaseError) database disk image is malformed [SQL: UPDATE states SET old_state_id=? 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?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)] [parameters: (None, 4603904, 4603905, 4603906, 4603907, 4603908, 4603909, 4603910, 4603911, 4603912, 4603913, 4603914, 4603915, 4603916, 4603917, 4603918, 4603919, 4603920, 4603921, 4603922, 4603923, 4603924, 4603925, 4603926, 4603927, 4603928, 4603929, 4603930, 4603931, 4603932, 4603933, 4603934, 4603935, 4603936, 4603937, 4603938, 4603939, 4603940, 4603941, 4603942, 4603943, 4603944, 4603945, 4603946, 4603947, 4603948, 4603949, 4603950, 4603951, 4603952 ... 3901 parameters truncated ... 4603854, 4603855, 4603856, 4603857, 4603858, 4603859, 4603860, 4603861, 4603862, 4603863, 4603864, 4603865, 4603866, 4603867, 4603868, 4603869, 4603870, 4603871, 4603872, 4603873, 4603874, 4603875, 4603876, 4603877, 4603878, 4603879, 4603880, 4603881, 4603882, 4603883, 4603884, 4603885, 4603886, 4603887, 4603888, 4603889, 4603890, 4603891, 4603892, 4603893, 4603894, 4603895, 4603896, 4603897, 4603898, 4603899, 4603900, 4603901, 4603902, 4603903)] (Background on this error at: https://sqlalche.me/e/20/4xp6) Traceback (most recent call last): File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1971, in _exec_single_context self.dialect.do_execute( File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/default.py", line 919, in do_execute cursor.execute(statement, parameters) sqlite3.DatabaseError: database disk image is malformed The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/src/homeassistant/homeassistant/components/recorder/core.py", line 920, in _process_one_task_or_event_or_recover return task.run(self) ^^^^^^^^^^^^^^ File "/usr/src/homeassistant/homeassistant/components/recorder/tasks.py", line 113, in run if purge.purge_old_data( ^^^^^^^^^^^^^^^^^^^^^ File "/usr/src/homeassistant/homeassistant/components/recorder/util.py", line 645, in wrapper return job(instance, *args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/src/homeassistant/homeassistant/components/recorder/purge.py", line 87, in purge_old_data has_more_to_purge |= _purge_states_and_attributes_ids( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/src/homeassistant/homeassistant/components/recorder/purge.py", line 200, in _purge_states_and_attributes_ids _purge_state_ids(instance, session, state_ids) File "/usr/src/homeassistant/homeassistant/components/recorder/purge.py", line 519, in _purge_state_ids disconnected_rows = session.execute(disconnect_states_rows(state_ids)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/orm/session.py", line 2306, in execute return self._execute_internal( ^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/orm/session.py", line 2191, in _execute_internal result: Result[Any] = compile_state_cls.orm_execute_statement( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/orm/bulk_persistence.py", line 1617, in orm_execute_statement return super().orm_execute_statement( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/orm/context.py", line 293, in orm_execute_statement result = conn.execute( ^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1422, in execute return meth( ^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/sql/lambdas.py", line 603, in _execute_on_connection return connection._execute_clauseelement( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1644, in _execute_clauseelement ret = self._execute_context( ^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1850, in _execute_context return self._exec_single_context( ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1990, in _exec_single_context self._handle_dbapi_exception( File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 2357, in _handle_dbapi_exception raise sqlalchemy_exception.with_traceback(exc_info[2]) from e File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/base.py", line 1971, in _exec_single_context self.dialect.do_execute( File "/usr/local/lib/python3.12/site-packages/sqlalchemy/engine/default.py", line 919, in do_execute cursor.execute(statement, parameters) sqlalchemy.exc.DatabaseError: (sqlite3.DatabaseError) database disk image is malformed [SQL: UPDATE states SET old_state_id=? 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?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)] [parameters: (None, 4603904, 4603905, 4603906, 4603907, 4603908, 4603909, 4603910, 4603911, 4603912, 4603913, 4603914, 4603915, 4603916, 4603917, 4603918, 4603919, 4603920, 4603921, 4603922, 4603923, 4603924, 4603925, 4603926, 4603927, 4603928, 4603929, 4603930, 4603931, 4603932, 4603933, 4603934, 4603935, 4603936, 4603937, 4603938, 4603939, 4603940, 4603941, 4603942, 4603943, 4603944, 4603945, 4603946, 4603947, 4603948, 4603949, 4603950, 4603951, 4603952 ... 3901 parameters truncated ... 4603854, 4603855, 4603856, 4603857, 4603858, 4603859, 4603860, 4603861, 4603862, 4603863, 4603864, 4603865, 4603866, 4603867, 4603868, 4603869, 4603870, 4603871, 4603872, 4603873, 4603874, 4603875, 4603876, 4603877, 4603878, 4603879, 4603880, 4603881, 4603882, 4603883, 4603884, 4603885, 4603886, 4603887, 4603888, 4603889, 4603890, 4603891, 4603892, 4603893, 4603894, 4603895, 4603896, 4603897, 4603898, 4603899, 4603900, 4603901, 4603902, 4603903)] (Background on this error at: https://sqlalche.me/e/20/4xp6) ``` ### Additional information I've found the database very unstable, this has happened a few times already, on different systems, including non-VM on raspberry and without manual trigger from my side.