I cannot find anything wrong but…
In the log it is reported /dev/ttyAMA0 and not /dev/ttyUSB0.
It could be matter?
[marthoc/deconz] Starting deCONZ...
[marthoc/deconz] Current deCONZ version: 2.05.44
[marthoc/deconz] Web UI port: 80
[marthoc/deconz] Websockets port: 443
libpng warning: iCCP: known incorrect sRGB profile
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
This plugin does not support propagateSizeHints()
09:23:14:944 HTTP Server listen on address 0.0.0.0, port: 80, root: /usr/share/deCONZ/webapp/
09:23:14:958 CTRL. 3.16.209:23:15:042 dev /dev/ttyAMA0
09:23:15:042 ZCLDB init file /root/.local/share/dresden-elektronik/deCONZ/zcldb.txt
09:23:15:202 parent process /bin/sh
09:23:15:203 gw run mode: normal
09:23:15:203 sd-card cid: 035344534333324780ffffffff012aa7
09:23:15:204 DB sqlite version 3.16.2
09:23:15:206 DB PRAGMA page_count: 30
09:23:15:206 DB PRAGMA page_size: 4096
09:23:15:206 DB PRAGMA freelist_count: 0
09:23:15:206 DB file size 122880 bytes, free pages 0
09:23:15:206 DB PRAGMA user_version: 6
09:23:15:206 DB cleanup
09:23:15:206 DB create temporary views
09:23:15:212 don't close database yet, keep open for 900 seconds
09:23:15:213 started websocket server at port 443
09:23:15:218 discovery updated announce interval to 10 minutes
09:23:15:220 found node plugin: libde_rest_plugin.so - REST API Plugin
09:23:15:224 found node plugin: libde_signal_plugin.so - Signal Monitor Plugin
09:23:15:239 found node plugin: libstd_otau_plugin.so - STD OTAU Plugin
09:23:15:273 dev /dev/ttyAMA0
09:23:15:318 discard sensor state push for 1: state/dark (already pushed)
09:23:15:320 discard sensor state push for 1: state/status (already pushed)
09:23:15:321 discard sensor state push for 1: state/lastupdated (already pushed)
09:23:16:137 dev /dev/ttyAMA0
09:23:16:182 dev /dev/ttyAMA0
09:23:16:240 Device firmware version 0x261F0500
09:23:16:260 unlocked max nodes: 200
09:23:16:549 Device protocol version: 0x0106
09:23:16:569 new node - ext: 0x00212effff02a416, nwk: 0x0000
09:23:16:679 APS-DATA.request id: 3, addrmode: 0x02, addr: 0x0000, profile: 0x0000, cluster: 0x0002, ep: 0x00 -> 0x00 queue: 0 len: 3 tx.options 0x00
09:23:16:679 ZDP send request id: 0x03 to 0x00212effff02a416
09:23:16:757 Current channel 15
09:23:16:821 CTRL ANT_CTRL 0x02
09:23:16:933 Device protocol version: 0x0106
09:23:17:126 Current channel 15
09:23:17:189 CTRL ANT_CTRL 0x02
09:23:17:430 APS-DATA.confirm id: 3, status: 0x00 SUCCESS
09:23:17:430 APS-DATA.confirm request id: 3 -> confirmed, timeout 13277104
09:23:17:463 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x0002, lqi: 0, rssi: 0
09:23:17:463 ZDP status = 0x00 -> SUCCESS
09:23:17:494 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x8002, lqi: 0, rssi: 0
09:23:17:494 APS-DATA.indication request id: 3 -> finished
09:23:17:494 APS-DATA.request id: 3 erase from queue
09:23:17:494 ZDP status = 0x00 -> SUCCESS
09:23:17:496 don't close database yet, keep open for 900 seconds
09:23:17:558 ZDP active ep request to 0x00212effff02a416
09:23:17:559 APS-DATA.request id: 7, addrmode: 0x02, addr: 0x0000, profile: 0x0000, cluster: 0x0005, ep: 0x00 -> 0x00 queue: 0 len: 3 tx.options 0x00
09:23:17:559 ZDP send request id: 0x07 to 0x00212effff02a416
09:23:17:622 APS-DATA.confirm id: 7, status: 0x00 SUCCESS
09:23:17:622 APS-DATA.confirm request id: 7 -> confirmed, timeout 15371688
09:23:17:654 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x0005, lqi: 0, rssi: 0
09:23:17:654 ZDP status = 0x00 -> SUCCESS
09:23:17:687 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x8005, lqi: 0, rssi: 0
09:23:17:687 APS-DATA.indication request id: 7 -> finished
09:23:17:687 APS-DATA.request id: 7 erase from queue
09:23:17:687 ZDP status = 0x00 -> SUCCESS
09:23:17:687 ZDP active ep response for 0x00212effff02a416
09:23:17:687 ep: 0x01
09:23:17:687 ep: 0x50
09:23:17:879 APS-DATA.request id: 10, addrmode: 0x02, addr: 0x0000, profile: 0x0000, cluster: 0x0004, ep: 0x00 -> 0x00 queue: 0 len: 4 tx.options 0x00
09:23:17:879 ZDP send request id: 0x05 to 0x00212effff02a416
09:23:17:943 APS-DATA.confirm id: 10, status: 0x00 SUCCESS
09:23:17:943 APS-DATA.confirm request id: 10 -> confirmed, timeout 15448448
09:23:17:974 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x0004, lqi: 0, rssi: 0
09:23:17:974 ZDP status = 0x00 -> SUCCESS
09:23:18:007 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x8004, lqi: 0, rssi: 0
09:23:18:007 APS-DATA.indication request id: 10 -> finished
09:23:18:007 APS-DATA.request id: 10 erase from queue
09:23:18:007 ZDP status = 0x00 -> SUCCESS
09:23:18:011 don't close database yet, keep open for 900 seconds
09:23:18:039 APS-DATA.request id: 13, addrmode: 0x02, addr: 0x0000, profile: 0x0000, cluster: 0x0004, ep: 0x00 -> 0x00 queue: 0 len: 4 tx.options 0x00
09:23:18:039 ZDP send request id: 0x05 to 0x00212effff02a416
09:23:18:102 APS-DATA.confirm id: 13, status: 0x00 SUCCESS
09:23:18:102 APS-DATA.confirm request id: 13 -> confirmed, timeout 15371768
09:23:18:134 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x0004, lqi: 0, rssi: 0
09:23:18:134 ZDP status = 0x00 -> SUCCESS
09:23:18:167 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x8004, lqi: 0, rssi: 0
09:23:18:167 APS-DATA.indication request id: 13 -> finished
09:23:18:167 APS-DATA.request id: 13 erase from queue
09:23:18:167 ZDP status = 0x00 -> SUCCESS
09:23:18:170 don't close database yet, keep open for 900 seconds
09:23:18:279 ZDP discovery done in 271 ms09:23:18:519 Mgmt_Lqi_req zdpSeq: 5 to 0x00212EFFFF02A416 start index 0
09:23:18:519 APS-DATA.request id: 16, addrmode: 0x03, addr: 0x00212effff02a416, profile: 0x0000, cluster: 0x0031, ep: 0x00 -> 0x00 queue: 0 len: 2 tx.options 0x00
09:23:18:582 APS-DATA.confirm id: 16, status: 0x00 SUCCESS
09:23:18:583 APS-DATA.confirm request id: 16 -> confirmed, timeout 15457056
09:23:18:615 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x0031, lqi: 0, rssi: 0
09:23:18:615 ZDP status = 0x00 -> SUCCESS
09:23:18:647 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x8031, lqi: 0, rssi: 0
09:23:18:647 APS-DATA.indication request id: 16 -> finished
09:23:18:647 APS-DATA.request id: 16 erase from queue
09:23:18:647 ZDP status = 0x00 -> SUCCESS
09:23:18:647 ZDP Mgmt_Lqi_rsp zdpSeq: 5 from 0x00212EFFFF02A416 total: 0, startIndex: 0, listCount: 0
09:23:20:557 dev /dev/ttyAMA0
09:23:20:558 GW update firmware found: /usr/share/deCONZ/firmware/deCONZ_Rpi_0x262d0500.bin.GCF
09:23:20:558 GW firmware version: 0x261f0500
09:23:20:558 GW firmware version shall be updated to: 0x262d0500
09:23:20:919 Mgmt_Lqi_req zdpSeq: 6 to 0x00212EFFFF02A416 start index 0
09:23:20:919 APS-DATA.request id: 19, addrmode: 0x03, addr: 0x00212effff02a416, profile: 0x0000, cluster: 0x0031, ep: 0x00 -> 0x00 queue: 0 len: 2 tx.options 0x00
09:23:20:985 APS-DATA.confirm id: 19, status: 0x00 SUCCESS
09:23:20:985 APS-DATA.confirm request id: 19 -> confirmed, timeout 15568776
09:23:21:008 Announced to internet
09:23:21:009 discovery server date: Sat, 10 Nov 2018 09:23:20 GMT
09:23:21:009 local time seems to be ok
09:23:21:009 discovery found version 2.04.35 for update channel stable
09:23:21:016 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x0031, lqi: 0, rssi: 0
09:23:21:017 ZDP status = 0x00 -> SUCCESS
09:23:21:048 APS-DATA.indication srcAddr: 0x00212effff02a416, srcEp: 0x00 dstAddrMode: 2, profile: 0x0000, cluster: 0x8031, lqi: 0, rssi: 0
09:23:21:048 APS-DATA.indication request id: 19 -> finished
09:23:21:048 APS-DATA.request id: 19 erase from queue
09:23:21:048 ZDP status = 0x00 -> SUCCESS
09:23:21:048 ZDP Mgmt_Lqi_rsp zdpSeq: 6 from 0x00212EFFFF02A416 total: 0, startIndex: 0, listCount: 0
09:23:23:319 Mgmt_Lqi_req zdpSeq: 7 to 0x00212EFFFF02A416 start index 0
09:23:23:319 APS-DATA.request id: 22, addrmode: 0x03, addr: 0x00212effff02a416, profile: 0x0000, cluster: 0x0031, ep: 0x00 -> 0x00 queue: 0 len: 2 tx.options 0x00
09:23:23:386 APS-DATA.confirm id: 22, status: 0x00 SUCCESS
09:23:23:386 APS-DATA.confirm request id: 22 -> confirmed, timeout 15461680
I found in this DOC this section:
### Configuring Raspbian for RaspBee
By default, Raspbian enables Bluetooth and configures a login shell over serial (tty); you must disable BT, disable the tty, and enable the serial port hardware to allow RaspBee to work properly under Docker.
On a fresh install of Raspbian:
1. `echo 'dtoverlay=pi3-disable-bt' | sudo tee -a /boot/config.txt`
2. `sudo raspi-config`
3. Select `Interfacing Options`
4. Select `Serial`
5. “Would you like a login shell to be accessible over serial?” Select `No`
6. “Would you like the serial port hardware to be enabled?” Select `Yes`
7. Exit raspi-config and reboot
but it is written for RaspBee and not for ConBee…