starting version 3.2.2
# INFO: Using main config file /data/workdir/config
+ Account already registered!
Tue Feb 6 08:51:00 EST 2018: OK
2XX.XX.XX.118
NOCHANGE
INFO: Using main config file /data/workdir/config
Processing myDomain.duckdns.org
+ Checking domain name(s) of existing cert... unchanged.
+ Checking expire date of existing cert...
+ Valid till May 7 11:01:42 2018 GMT (Longer than 30 days). Skipping renew!
Tue Feb 6 08:56:04 EST 2018: OK
2XX.XX.XX.118
I see spaces in the base_url, That should not be the case.
Also I notice a 4 spaces in your config at duckdns and in the configuration.yaml at the beginning of every line.
That might be a copy paste issue…