Spook reports problems with automations and scripts even if they are disabled with no way to configure this setting. There might be many use cases where devices and entities might be unavailable temporarily or for a long-term. Two examples might be an integration that has a breaking update or a vendor that blocks API access (temporarily, we might hope). I might want to disable the related automations instead of deleting them so when the integration is restored I have them ready to re-enable.
This is similar to how I wouldn’t expect to receive log messages from or problem reports for disabled integrations.